Search | Virtual Health Library

1.

From genomic threat assessment to conservation action.

van der Valk, Tom; Dalèn, Love.

Cell ; 187(5): 1038-1041, 2024 Feb 29.

Article in English | MEDLINE | ID: mdl-38428386

2.

Ancient and modern genomes unravel the evolutionary history of the rhinoceros family.

Liu, Shanlin; Westbury, Michael V; Dussex, Nicolas; Mitchell, Kieren J; Sinding, Mikkel-Holger S; Heintzman, Peter D; Duchêne, David A; Kapp, Joshua D; von Seth, Johanna; Heiniger, Holly; Sánchez-Barreiro, Fátima; Margaryan, Ashot; André-Olsen, Remi; De Cahsan, Binia; Meng, Guanliang; Yang, Chentao; Chen, Lei; van der Valk, Tom; Moodley, Yoshan; Rookmaaker, Kees; Bruford, Michael W; Ryder, Oliver; Steiner, Cynthia; Bruins-van Sonsbeek, Linda G R; Vartanyan, Sergey; Guo, Chunxue; Cooper, Alan; Kosintsev, Pavel; Kirillova, Irina; Lister, Adrian M; Marques-Bonet, Tomas; Gopalakrishnan, Shyam; Dunn, Robert R; Lorenzen, Eline D; Shapiro, Beth; Zhang, Guojie; Antoine, Pierre-Olivier; Dalén, Love; Gilbert, M Thomas P.

Cell ; 184(19): 4874-4885.e16, 2021 09 16.

Article in English | MEDLINE | ID: mdl-34433011

3.

Million-year-old DNA sheds light on the genomic history of mammoths.

van der Valk, Tom; Pecnerová, Patrícia; Díez-Del-Molino, David; Bergström, Anders; Oppenheimer, Jonas; Hartmann, Stefanie; Xenikoudakis, Georgios; Thomas, Jessica A; Dehasque, Marianne; Saglican, Ekin; Fidan, Fatma Rabia; Barnes, Ian; Liu, Shanlin; Somel, Mehmet; Heintzman, Peter D; Nikolskiy, Pavel; Shapiro, Beth; Skoglund, Pontus; Hofreiter, Michael; Lister, Adrian M; Götherström, Anders; Dalén, Love.

Nature ; 591(7849): 265-269, 2021 03.

Article in English | MEDLINE | ID: mdl-33597750

4.

Whole-genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species.

Estravis Barcala, Maximiliano; van der Valk, Tom; Chen, Zhiqiang; Funda, Tomas; Chaudhary, Rajiv; Klingberg, Adam; Fundova, Irena; Suontama, Mari; Hallingbäck, Henrik; Bernhardsson, Carolina; Nystedt, Björn; Ingvarsson, Pär K; Sherwood, Ellen; Street, Nathaniel; Gyllensten, Ulf; Nilsson, Ove; Wu, Harry X.

Plant J ; 117(3): 944-955, 2024 Feb.

Article in English | MEDLINE | ID: mdl-37947292

5.

Population genomics of the muskox' resilience in the near absence of genetic variation.

Pecnerová, Patrícia; Lord, Edana; Garcia-Erill, Genís; Hanghøj, Kristian; Rasmussen, Malthe Sebro; Meisner, Jonas; Liu, Xiaodong; van der Valk, Tom; Santander, Cindy G; Quinn, Liam; Lin, Long; Liu, Shanlin; Carøe, Christian; Dalerum, Fredrik; Götherström, Anders; Måsviken, Johannes; Vartanyan, Sergey; Raundrup, Katrine; Al-Chaer, Amal; Rasmussen, Linett; Hvilsom, Christina; Heide-Jørgensen, Mads Peter; Sinding, Mikkel-Holger S; Aastrup, Peter; Van Coeverden de Groot, Peter J; Schmidt, Niels Martin; Albrechtsen, Anders; Dalén, Love; Heller, Rasmus; Moltke, Ida; Siegismund, Hans Redlef.

Mol Ecol ; 33(2): e17205, 2024 Jan.

Article in English | MEDLINE | ID: mdl-37971141

6.

Genomic evidence for inbreeding depression and purging of deleterious genetic variation in Indian tigers.

Khan, Anubhab; Patel, Kaushalkumar; Shukla, Harsh; Viswanathan, Ashwin; van der Valk, Tom; Borthakur, Udayan; Nigam, Parag; Zachariah, Arun; Jhala, Yadavendradev V; Kardos, Marty; Ramakrishnan, Uma.

Proc Natl Acad Sci U S A ; 118(49)2021 12 07.

Article in English | MEDLINE | ID: mdl-34848534

7.

GenErode: a bioinformatics pipeline to investigate genome erosion in endangered and extinct species.

Kutschera, Verena E; Kierczak, Marcin; van der Valk, Tom; von Seth, Johanna; Dussex, Nicolas; Lord, Edana; Dehasque, Marianne; Stanton, David W G; Khoonsari, Payam Emami; Nystedt, Björn; Dalén, Love; Díez-Del-Molino, David.

BMC Bioinformatics ; 23(1): 228, 2022 Jun 13.

Article in English | MEDLINE | ID: mdl-35698034

8.

Genomic trajectories of a near-extinction event in the Chatham Island black robin.

von Seth, Johanna; van der Valk, Tom; Lord, Edana; Sigeman, Hanna; Olsen, Remi-André; Knapp, Michael; Kardailsky, Olga; Robertson, Fiona; Hale, Marie; Houston, Dave; Kennedy, Euan; Dalén, Love; Norén, Karin; Massaro, Melanie; Robertson, Bruce C; Dussex, Nicolas.

BMC Genomics ; 23(1): 747, 2022 Nov 10.

Article in English | MEDLINE | ID: mdl-36357860

9.

Dental Calculus as a Tool to Study the Evolution of the Mammalian Oral Microbiome.

Brealey, Jaelle C; Leitão, Henrique G; van der Valk, Tom; Xu, Wenbo; Bougiouri, Katia; Dalén, Love; Guschanski, Katerina.

Mol Biol Evol ; 37(10): 3003-3022, 2020 10 01.

Article in English | MEDLINE | ID: mdl-32467975

10.

The Genome of the Endangered Dryas Monkey Provides New Insights into the Evolutionary History of the Vervets.

van der Valk, Tom; Gonda, Catalina M; Silegowa, Henri; Almanza, Sandra; Sifuentes-Romero, Itzel; Hart, Terese B; Hart, John A; Detwiler, Kate M; Guschanski, Katerina.

Mol Biol Evol ; 37(1): 183-194, 2020 Jan 01.

Article in English | MEDLINE | ID: mdl-31529046

11.

Competitive mapping allows for the identification and exclusion of human DNA contamination in ancient faunal genomic datasets.

Feuerborn, Tatiana R; Palkopoulou, Eleftheria; van der Valk, Tom; von Seth, Johanna; Munters, Arielle R; Pecnerová, Patrícia; Dehasque, Marianne; Ureña, Irene; Ersmark, Erik; Lagerholm, Vendela Kempe; Krzewinska, Maja; Rodríguez-Varela, Ricardo; Götherström, Anders; Dalén, Love; Díez-Del-Molino, David.

BMC Genomics ; 21(1): 844, 2020 Nov 30.

Article in English | MEDLINE | ID: mdl-33256612

12.

Moose genomes reveal past glacial demography and the origin of modern lineages.

Dussex, Nicolas; Alberti, Federica; Heino, Matti T; Olsen, Remi-Andre; van der Valk, Tom; Ryman, Nils; Laikre, Linda; Ahlgren, Hans; Askeyev, Igor V; Askeyev, Oleg V; Shaymuratova, Dilyara N; Askeyev, Arthur O; Döppes, Doris; Friedrich, Ronny; Lindauer, Susanne; Rosendahl, Wilfried; Aspi, Jouni; Hofreiter, Michael; Lidén, Kerstin; Dalén, Love; Díez-Del-Molino, David.

BMC Genomics ; 21(1): 854, 2020 Dec 02.

Article in English | MEDLINE | ID: mdl-33267779

13.

Antimicrobial peptide and sequence variation along a latitudinal gradient in two anurans.

Cortázar-Chinarro, Maria; Meyer-Lucht, Yvonne; Van der Valk, Tom; Richter-Boix, Alex; Laurila, Anssi; Höglund, Jacob.

BMC Genet ; 21(1): 38, 2020 03 30.

Article in English | MEDLINE | ID: mdl-32228443

14.

Mammuthus sp. (Early and Middle Pleistocene Mammoths).

Pecnerová, Patrícia; Díez-Del-Molino, David; van der Valk, Tom; Dehasque, Marianne; Götherström, Anders; Dalén, Love.

Trends Genet ; 37(7): 682-683, 2021 07.

Article in English | MEDLINE | ID: mdl-33985817

15.

Host-derived population genomics data provides insights into bacterial and diatom composition of the killer whale skin.

Hooper, Rebecca; Brealey, Jaelle C; van der Valk, Tom; Alberdi, Antton; Durban, John W; Fearnbach, Holly; Robertson, Kelly M; Baird, Robin W; Bradley Hanson, M; Wade, Paul; Gilbert, M Thomas P; Morin, Phillip A; Wolf, Jochen B W; Foote, Andrew D; Guschanski, Katerina.

Mol Ecol ; 28(2): 484-502, 2019 01.

Article in English | MEDLINE | ID: mdl-30187987

16.

Population-level assessment of genetic diversity and habitat fragmentation in critically endangered Grauer's gorillas.

Baas, Pauline; van der Valk, Tom; Vigilant, Linda; Ngobobo, Urbain; Binyinyi, Escobar; Nishuli, Radar; Caillaud, Damien; Guschanski, Katerina.

Am J Phys Anthropol ; 165(3): 565-575, 2018 03.

Article in English | MEDLINE | ID: mdl-29313894

17.

Comparative genomic analyses provide new insights into evolutionary history and conservation genomics of gorillas.

van der Valk, Tom; Jensen, Axel; Caillaud, Damien; Guschanski, Katerina.

BMC Ecol Evol ; 24(1): 14, 2024 Jan 26.

Article in English | MEDLINE | ID: mdl-38273244

18.

An elephant in the glasshouse? Trade-offs between acceleration and transformation in COVID-19 vaccine innovation policies.

van de Burgwal, Linda; van der Valk, Tom; Kempter, Hannes; Gadau, Manuel; Stubbs, David; Boon, Wouter.

Environ Innov Soc Transit ; 48: 100736, 2023 Sep.

Article in English | MEDLINE | ID: mdl-37250374

19.

aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow.

Pochon, Zoé; Bergfeldt, Nora; Kirdök, Emrah; Vicente, Mário; Naidoo, Thijessen; van der Valk, Tom; Altinisik, N Ezgi; Krzewinska, Maja; Dalén, Love; Götherström, Anders; Mirabello, Claudio; Unneberg, Per; Oskolkov, Nikolay.

Genome Biol ; 24(1): 242, 2023 10 23.

Article in English | MEDLINE | ID: mdl-37872569

20.

Genomics of adaptive evolution in the woolly mammoth.

Díez-Del-Molino, David; Dehasque, Marianne; Chacón-Duque, J Camilo; Pecnerová, Patrícia; Tikhonov, Alexei; Protopopov, Albert; Plotnikov, Valeri; Kanellidou, Foteini; Nikolskiy, Pavel; Mortensen, Peter; Danilov, Gleb K; Vartanyan, Sergey; Gilbert, M Thomas P; Lister, Adrian M; Heintzman, Peter D; van der Valk, Tom; Dalén, Love.

Curr Biol ; 33(9): 1753-1764.e4, 2023 05 08.

Article in English | MEDLINE | ID: mdl-37030294

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